hammerlab / genomic-loci

Utilities for representing genomic loci and reference-genomes

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genomic-loci

Build Status Coverage Status Maven Central

Utilities for working with genomic loci.

  • parsing: utilities for parsing string-representations of loci.
  • set: LociSet data-structure: stores genomic-loci ranges and allows for intersection/containment checks.
  • map: LociMap data-structure: allows for mapping genomic ranges to arbitrary values.
  • iterator: iterators for traversing genomic loci.