Load genomic BAM files using Apache Spark
Miscellaneous functionality for manipulating Apache Spark RDDs.
type-classes for structural manipulation of algebraic data types
Utilities for writing tests that use Apache Spark.
SBT plugins for publishing to Maven Central, shading and managing dependencies, reporting to Coveralls from TravisCI, and more
low-level helpers for Apache Spark libraries and tests
Enrichment-methods for Scala collections (Iterators, Iterables, Arrays)
Math and statistics utilities
Libraries for console/file I/O, processing/formatting sizes in bytes, etc.
Spark-based implementation of pDC3, a linear-time parallel suffix-array-construction algorithm
Utilities for representing genomic loci and reference-genomes
Library for representing and working with genomic-sequencing reads.
A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
General (non-omics) code used across BDG products. Apache 2 licensed.
Helpers for creating command-line applications
Utilities for representing and working with reference genomes
Library for representing and working with sets of genomic-sequencing reads, e.g. BAM files.