hammerlab/iterators

Enrichment-methods for Scala collections (Iterators, Iterables, Arrays)

hammerlab/shapeless-utils

type-classes for structural manipulation of algebraic data types

hammerlab/magic-rdds

Miscellaneous functionality for manipulating Apache Spark RDDs.

hammerlab/string-utils

String/CSV utilities

hammerlab/spark-util

low-level helpers for Apache Spark libraries and tests

hammerlab/genomic-reads

Library for representing and working with genomic-sequencing reads.

hammerlab/spark-tests

Utilities for writing tests that use Apache Spark.

hammerlab/spark-bam

Load genomic BAM files using Apache Spark

hammerlab/cli-utils

Helpers for creating command-line applications

hammerlab/adam

A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

hammerlab/genomic-utils

Utilities for working with genomic bases, cigar strings, and phred scores.

hammerlab/path-utils

Scala convenience-wrapper for java.nio.file.Path

hammerlab/adam-core