type-classes for structural manipulation of algebraic data types
low-level helpers for Apache Spark libraries and tests
Utilities for writing tests that use Apache Spark.
Miscellaneous functionality for manipulating Apache Spark RDDs.
General (non-omics) code used across BDG products. Apache 2 licensed.
A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
Enrichment-methods for Scala collections (Iterators, Iterables, Arrays)
Library for representing and working with sets of genomic-sequencing reads, e.g. BAM files.
Load genomic BAM files using Apache Spark
Utilities for representing genomic loci and reference-genomes
Libraries for console/file I/O, processing/formatting sizes in bytes, etc.
Library for representing and working with genomic-sequencing reads.
Stand-alone utility for filtering a BAM file to specific genomic regions, using Apache Spark.