hammerlab/shapeless-utils

type-classes for structural manipulation of algebraic data types

hammerlab/genomic-loci

Utilities for representing genomic loci and reference-genomes

hammerlab/path-utils

Scala convenience-wrapper for java.nio.file.Path

hammerlab/iterators

Enrichment-methods for Scala collections (Iterators, Iterables, Arrays)

hammerlab/spark-bam

Load genomic BAM files using Apache Spark

hammerlab/bdg-utils

General (non-omics) code used across BDG products. Apache 2 licensed.

hammerlab/cli-utils

Helpers for creating command-line applications

hammerlab/genomic-reads

Library for representing and working with genomic-sequencing reads.

hammerlab/hadoop-bam

Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework

hammerlab/adam-core_spark2