Miscellaneous functionality for manipulating Apache Spark RDDs.
Load genomic BAM files using Apache Spark
type-classes for structural manipulation of algebraic data types
Utilities for writing tests that use Apache Spark.
SBT plugins for publishing to Maven Central, shading and managing dependencies, reporting to Coveralls from TravisCI, and more
low-level helpers for Apache Spark libraries and tests
Enrichment-methods for Scala collections (Iterators, Iterables, Arrays)
Math and statistics utilities
Libraries for console/file I/O, processing/formatting sizes in bytes, etc.
Spark-based implementation of pDC3, a linear-time parallel suffix-array-construction algorithm
General (non-omics) code used across BDG products. Apache 2 licensed.
Library for representing and working with genomic-sequencing reads.
Helpers for creating command-line applications
Utilities for representing genomic loci and reference-genomes
A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.