Miscellaneous functionality for manipulating Apache Spark RDDs.
Load genomic BAM files using Apache Spark
Utilities for writing tests that use Apache Spark.
Utilities for representing genomic loci and reference-genomes
Helpers for creating command-line applications
A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
Type-level & seamless command-line argument parsing for Scala
Library for representing and working with sets of genomic-sequencing reads, e.g. BAM files.