Utilities for representing genomic loci and reference-genomes
A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
type-classes for structural manipulation of algebraic data types
Load genomic BAM files using Apache Spark
Helpers for creating command-line applications
Library for representing and working with genomic-sequencing reads.
Utilities for representing and working with reference genomes
Library for representing and working with sets of genomic-sequencing reads, e.g. BAM files.
Enrichment-methods for Scala collections (Iterators, Iterables, Arrays)
Libraries for console/file I/O, processing/formatting sizes in bytes, etc.
Utilities for working with genomic bases, cigar strings, and phred scores.