Utilities for writing tests that use Apache Spark.
low-level helpers for Apache Spark libraries and tests
Enrichment-methods for Scala collections (Iterators, Iterables, Arrays)
type-classes for structural manipulation of algebraic data types
Utilities for representing genomic loci and reference-genomes
Math and statistics utilities
Libraries for console/file I/O, processing/formatting sizes in bytes, etc.
Library for representing and working with genomic-sequencing reads.
Miscellaneous functionality for manipulating Apache Spark RDDs.
Library for representing and working with sets of genomic-sequencing reads, e.g. BAM files.
Utilities for representing and working with reference genomes
Load genomic BAM files using Apache Spark
Helpers for creating command-line applications
A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
Utilities for working with genomic bases, cigar strings, and phred scores.