IJ-Plugins Toolkit is a set of plugins for ImageJ. The plugins are grouped into:
3D IO - import and export of data in 3D formats.
3D Toolkit - operations on stacks interpreted as 3D images, including morphological operations.
Color - color space conversion, color edge detection (color and multi-band images).
Filters - fast median filters, coherence enhancing diffusion, and various anisotropic diffusion filters.
Graphics > Image Quilter - A plugin to perform texture synthesis using the image quilting algorithm of Efros and Freeman.
Segmentation - image segmentation through clustering, thresholding, and region growing.
See the the Wiki for mode details on the plugins.
ImageJ Plugins Installation
Automatic Installation Through Update Center
Using as a Stand-alone Library
There are some examples of using IJ-Plugins Toolkit as a stand-alone library in the examples folder. You will need to add dependency on:
groupId : net.sf.ij-plugins artifactId: ijp-toolkit version : <current version>
For instance, for SBT it would be:
"net.sf.ij-plugins" %% "ijp-toolkit" % "<current version>"
Running from source
You can build and run the plugins within ImageJ using SBT task
It will build the code, setup plugins directory, and the start ImageJ.
ijRun is provided by SBT plugin sbt-imagej.