ValidateVcf validates a VCF file against a reference genomes. It checks if the positions present in the VCF are also present on the reference genoome.
For documentation and manuals visit our github.io page.
ValidateVcf is part of BIOPET tool suite that is developed at LUMC by the SASC team. Each tool in the BIOPET tool suite is meant to offer a standalone function that can be used to perform a dedicate data analysis task or added as part of a pipeline, for example the SASC team's biowdl pipelines.