FindOverlapMatch

FindOverlapMatch looks for overlapping samples in a sample matrix. An example of a tool that creates such a matrix is VcfStats.

It compares samples and lists similar samples based on a cutoff point. It can also check if columns in a sample matrix match a certain regex.

Documentation

For documentation and manuals visit our github.io page.

About

FindOverlapMatch is part of BIOPET tool suite that is developed at LUMC by the SASC team. Each tool in the BIOPET tool suite is meant to offer a standalone function that can be used to perform a dedicate data analysis task or added as part of a pipeline, for example the SASC team's biowdl pipelines.

All tools in the BIOPET tool suite are Free/Libre and Open Source Software.

Contact

For any question related to FindOverlapMatch, please use the github issue tracker or contact the SASC team directly at: sasc@lumc.nl.