DownloadNcbiAssembly

This tool downloads an assembly FASTA file from NCBI given an assembly report file. Columns can be filtered for regexes to exist or not exist. Contig name style can be selected.

Documentation

For documentation and manuals visit our github.io page.

About

DownloadNcbiAssembly is part of BIOPET tool suite that is developed at LUMC by the SASC team. Each tool in the BIOPET tool suite is meant to offer a standalone function that can be used to perform a dedicate data analysis task or added as part of a pipeline, for example the SASC team's biowdl pipelines.

All tools in the BIOPET tool suite are Free/Libre and Open Source Software.

Contact

For any question related to DownloadNcbiAssembly, please use the github issue tracker or contact the SASC team directly at: sasc@lumc.nl.