ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
Tools for working with genomic and high throughput sequencing data.
An open-source toolkit for large-scale genomic analysis
Reach Biomedical Information Extraction
Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
machine learning for genomic variants
Scala library for biochemical network simulation, associated with the 3rd edition of the textbook Stochastic Modelling for Systems Biology
pairwise sequence alignment in scala